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2006 SICG Publications

2006

Amato G, Ryder OA, Rosenbaum HCDeSalle R Editors. 2006. Conservation Genetics in the Age of Genomics. Columbia University Press, New York.

Ji XF, Wu XB, Li Y, Yan P, Amato G. 2006. The mitochondrial genome of Crocodylus niloticus with implications for phylogenetic relationships among crocodilians. Acta Zoolog Sin 52(4):810-818.

Kretzman M, Mentzer L, DiGiovanni R, Leslie MSAmato G. 2006. Microsatellite diversity and fitness in stranded juvenile harp seals (Phoca groenlandica). J Hered 97(6):555-560.

Giannini NP, Almeida FC, Simmons NB, DeSalle R. 2006. Phylogenetic relationships of the enigmatic Harpy fruit bat, Harpyionycteris (Mammalia: Chiroptera: Pteropodidae). Am Mus Novit 3533.

Vinh le SVarón AWheeler WC. 2006. Pairwise alignment with rearrangements.  Genome Inform 17(2):141-151.

DeSalle R. 2006. Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff. Conserv Biol 20(5):1545-1547.

Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, Depamphilis C, DeSalle R et al. 2006. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS 10(2):231-237.

Burk RD, DeSalle R. 2006. The tango and tangle of human papillomavirus and the human genome. J Natl Cancer Inst 98(15):1026-1027.

Barrowclough GF, Groth JG, Mertz LA. 2006. The RAG-1 exon in the avian order Caprimulgiformes: phylogeny, heterozygosity, and base composition. Mol Phylogenet Evol 41(1):238-248.

Lienau EKDeSalle R, Rosenfeld JA, Planet PJ. 2006. Reciprocal illumination in the gene content tree of life. Syst Biol 55(3):441-453.

Garcia-Espana A, Chung PJ, Zhao X, Lee A, Pellicer A, Yu J, Sun TT, DeSalle R. 2006. Origin of the tetraspanin uroplakins and their co-evolution with associated proteins: implications for uroplakin structure and function. Mol Phylogenet Evol 41(2):355-367.

de la Torre JE, Egan MG, Katari M, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R. 2006. ESTimating plant phylogeny: lessons from partitioning. BMC Evol Biol 6(1):48

Chiu JC, Lee EK, Egan MGSarkar IN, Coruzzi GM, DeSalle R. 2006. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics 22(6):699-707.

DeSalle R. 2006. What's in a character? J Biomed Inform 39(1):6-17.

Siddall ME, Aguado MT. 2006. Molecular phylogenetic evidence of a haplosporidian parasite infecting the polychaete Syllis nipponica (Imajima, 1966). Parasitol Res 99(3):309-312.

Sarkar IN. 2006. Phylogenetics in the modern era. J Biomed Inform 39(1):3-5.

Pomilla C & Rosenbaum HC. 2006. Estimates of relatedness in groups of humpback whales (Megaptera novaeangliae) on two wintering grounds of the Southern Hemisphere. Mol Ecol 15(9):2541-2555.

Amor DC, Kolokotronis SO, Medellín RA, Ramey Jr R, Ryder OA. 2006. Genética de la conservación. In: El Berrendo en México: Acciones de conservación. The Pronghorn in Mexico: Conservation Actions. (Valdes M, de la Cruz E, Peters E, and Pallares E, Eds.) Agrupación Sierra Madre - Instituto Nacional de Ecología (INE-SEMARNAT), México. pp 27-33.

Moyle RG, Cracraft J, Lakim M, Nais J, Sheldon FH. 2006. Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala). Mol Phylogenet Evol 39(3):893-898.

Dávalos LM. 2006. Earth history and the evolution of Caribbean bats. In: Evolution, Ecology, and Conservation of Island Bats. (Fleming, TH & Racey PA, Eds.) Chicago: University of Chicago Press.

Ochman H & Dávalos LM. 2006. The nature and dynamics of bacterial genomes. Science 311(5768):1730-1733.

Austin CC & Perkins SL. 2006. Parasites in a biodiversity hotspot: a survey of hematozoa and a molecular phylogenetic analysis of Plasmodium in New Guinea skinks. J Parasitol 92(4):770-777.

Charleston MA & Perkins SL. 2006. Traversing the tangle: algorithms and applications for cophylogenetic studies. J Biomed Inform 39:62-71.

Siddall ME & Aguado MT. 2006. Molecular phylogenetic evidence of a haplosporidian parasite infecting the polychaete Syllis nipponica (Imajima, 1966). Parasitol Res 99(3):309-312.

Smith WL & Wheeler WC. 2006. Venom evolution widespread in fishes: a phylogenetic road map for the bioprospecting of piscine venoms. J Hered 97(3):206-217.

Sparks JS & Smith WL. 2006. Sicyopterus lagocephalus: Widespread species, species complex, or neither? A critique on the use of molecular data for species identification. Mol Phylogenet Evol 40(3):900-902.

Steel M & Pickett KM. 2006. On the impossibility of uniform priors on clades. Mol Phylogenet Evol 39(2):585-586.

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