Miller, J.S., and P.P. Feeny. 1983. Effects of benzylisoquinoline alkaloids on the larvae of polyphagous Lepidoptera. Oecologia, 58: 332-339.
Miller, J.S. 1986. Phylogenetic systematics and chemical constraints on host-plant associations in the Papilioninae (Lepidoptera: Papilionidae). PhD Thesis, Cornell University, 320 pp.
Miller, J.S. 1987. Host-plant relationships in the Papilionidae (Lepidoptera): Parallel cladogenesis or colonization? Cladistics, 3: 105-120.
Miller, J.S. 1987. Phylogenetic studies in the Papilioninae (Lepidoptera: Papilionidae). Bulletin of the American Museum of Natural History, 186: 365-512.
Miller, J.S. 1987. A revision of the genus Phryganidia (Lepidoptera: Dioptidae), with description of a new species. Proceedings of the Entomological Society of Washington, 89: 303-321.
Miller, J.S. 1988. External genitalic morphology and copulatory mechanism of Cyanotricha necyria (Felder) (Dioptidae). Journal of the Lepidopterists’ Society, 42: 103-115.
Miller, J.S. 1989. Euchontha Walker and Pareuchontha new genus (Lepidoptera: Dioptidae): A revision, including description of three new species, and discussion of a male forewing modification. American Museum Novitates, 2938: 1-41.
Miller, J.S., and P.P. Feeny. 1989. Interspecific differences among swallowtail larvae (Lepidoptera: Papilionidae) in susceptibility to aristolochic acids and berberine. Ecological Entomology, 14: 287-296.
Godfrey, G.L., J.S. Miller, and D.J. Carter. 1989. Two mouthpart modifications in larval Notodontidae (Lepidoptera): their taxonomic distributions and putative functions. Journal of the New York Entomological Society, 97: 455-470.
Miller, J.S. 1991. Cladistics and classification of the Notodontidae (Lepidoptera: Noctuoidea) based on larval and adult morphology. Bulletin of the American Museum of Natural History, 204: 1-230.
Miller, J.S. 1992. Host-plant associations among prominent moths. BioScience, 42: 50-57.
Miller, J.S. 1992. Pupal morphology and the subfamily classification of the Notodontidae (Lepidoptera: Noctuoidea). Journal of the New York Entomological Society, 100: 228-256.
Miller, J.S., and L.D. Otero. 1994. Immature stages of Venezuelan Dioptinae (Notodontidae) in Josia and Thirmida. Journal of the Lepidopterists’ Society, 48: 338-372.
Miller, J.S., and J.W. Wenzel. 1995. Ecological characters and phylogeny. Annual Review of Entomology, 40: 389-415.
Miller, J.S. 1996. Phylogeny of the Neotropical moth tribe Josiini (Notodontidae: Dioptinae): a hidden case of Müllerian mimicry. Zoological Journal of the Linnean Society, 118: 1-45.
Miller, J.S., D.H. Janzen, and J.G. Franclemont. 1997. New species of Euhapigiodes, new genus, and Hapigiodes in Hapigiini, new tribe, from Costa Rica, with notes on their life history and immatures (Lepidoptera: Notodontidae). Tropical Lepidoptera, 8: 81-99.
Miller, J.S., A.V.Z. Brower, and R. DeSalle. 1997. Phylogeny of the neotropical moth tribe Josiini (Notodontidae: Dioptinae): Comparing and combining evidence from DNA sequences and morphology. Biological Journal of the Linnean Society, 60: 297-316.
Rawlins, J.R., and J.S. Miller. 2008. Dioptine moths of the Caribbean region: Description of two new genera with notes on biology and biogeography (Lepidoptera: Notodontidae: Dioptinae). Annals of the Carnegie Museum, 76: 203-226.
Miller, J.S., and L.A. Dyer. 2009. Special feature: Diversity of insect-plant interactions in the eastern Andes of Ecuador. Journal of Insect Science, 9: 26.
Miller, J.S. 2009. Generic revision of the Dioptinae (Lepidoptera: Noctuoidea: Notodontidae). Part 1: Dioptini. Bulletin of the American Museum of Natural History, 321(1): 1-674.
Miller, J.S. 2009. Generic revision of the Dioptinae (Lepidoptera: Noctuoidea: Notodontidae). Part 2: Josiini. Bulletin of the American Museum of Natural History, 321(2): 675-1022.