Make a Home for Microbes

How to Make a Winogradsky Column


Your body is home to trillions and trillions of tiny living things called microbes, and most of them live in your digestive tract. And no wonder, it is a warm and sheltered place filled with food — a perfect spot for bacteria! But not all microbes live in the same place. Based on the habitat they're most suited for, different species of bacteria live in different parts of the tract.

A Tummy Tour

Your digestive tract contains several different organs. Each organ has its own function and its own microbes.

Click on the dots to find out more!


Girl with body behind x-ray screen, which shows her esophagus, stomach, and intestines.
Large intestine
Small intestine

Food drops quickly from your mouth, through your esophagus, and into your stomach.

Your large intestine is where trillions of microbes ferment fiber and produce useful nutrients. Most of your body's bacteria live here.

Your small intestine is about 20 feet (6 meters) long! With the help of microbes, most food is broken down and absorbed here.

Almost no nutrients are absorbed in the stomach. It is filled with harsh acids that kill most bacteria. Only a few species live here.

Portrait photo of serious man with a large mustache and goatee in a suit and tie.

The Winogradsky column was named after Sergei Winogradsky, a Russian microbiologist.

Build an ecosystem for microbes to see how they separate into their own habitats. With just a few cupfuls of mud and other simple ingredients, you can create an entire ecosystem for bacteria called a Winogradsky column. In this sealed system, microbes reuse and recycle nutrients continuously. Over time, different species separate into visible layers depending on how they use—or don't use—oxygen, light, and nutrients such as carbon or sulfur. Each bacterial species finds its habitat according to its needs—much like in your digestive tract.

How to Make Your Own Winogradsky Column

What You Need


The Bottle

  • a 2-liter plastic bottle
  • scissors
  • permanent marker
  • large rubber band
  • plastic wrap
  • data collection notebook
  • crayons, color pencils, or markers
  • camera (optional)


  • mud
  • shovel and bucket (to dig and carry the mud)
  • water (from the tap or your mud source)
  • pitcher or small plastic bottle (to carry the water)
  • spoon and 2 mixing bowls (1 large, 1 medium)
  • a page of newspaper, shredded
  • an egg yolk (raw or hard-boiled)
  • rubber boots and old clothes that can get muddy (optional)
  • gloves (optional)

What to do

Part 1: Prepare the Stuff



1. Carefully cut off the curved top of the plastic bottle. Ask an adult to help you.


2. Draw two short lines on the bottle: one about a quarter from the bottom of the bottle, the other a quarter of the way from the top.



3. Dig up mud from a pond, rain puddle, or riverbed. The mud is full of microbes! Fill your bucket with enough mud to fill the plastic bottle.

4. Remove rocks, twigs, or other solid matter from mud. Be careful of broken glass.


5. Collect water from the mud source (or use tap water).



6. Cut a sheet of newspaper into thin strips. Then, cut the strips into tiny rectangles. These will provide carbon for the microbes in the mud.

7. If using a hard-boiled egg, ask an adult to help you cook it. The yolk will provide sulfur for the microbes in the mud.


8. Put enough mud into the large mixing bowl to fill three-quarters of the bottle. Add water and stir until mud is the consistency of a milkshake.


9. Transfer about one-fourth of the mud-shake into the medium mixing bowl. Stir in a handful of shredded newspaper and add the egg yolk.

Part 2: Make the Ecosystem


10. Spoon the egg yolk and newspaper mud mixture into the plastic bottle until it's about a quarter of the way from the bottom (stop at the line). Once in a while, gently tap the bottle on on a hard surface to remove air pockets as the mud settles to the bottom.


11. Spoon the regular mud mixture into the bottle until it's about a quarter of the way from the top (stop at the line). Gently tap the bottle on the table to remove air pockets.


12. Top with a little bit of water, leaving about an inch of air at the top.


13. Cover the bottle with plastic wrap and secure it with a rubber band.

14. Place your column in a brightly lit place.

Part 3: Track the Microbes' Movement


15. Over the next eight to ten weeks, watch for various color layers to form as microbes separate into their habitats.

16. At least once a week, on the same day at the same time, write down and draw any changes you see, including colors, the movement or thickening of sediment, and any differences between the side facing the light and the once facing away. You can also take photos for comparison. Note the day and time the photo was taken.

Part 4: Identify the Microbes

17. Just as no two people's gut microbes are exactly the same, no two Winogradsky columns are the same. Depending on the microbes present and the amount of nutrients available, many different layers may form.

Check out some common microbes that might grow in your column. Does yours include any of them?

Click on the dots to reveal what it's like inside the Winogradsky column, and where certain microbes live.

Winogradsky column, with visible layers of various colors. The top of the column has more oxygen, more light, and less sulfur than the bottom.

Oxygen levels are highest at the top of the column. Microbes that that grow here use oxygen and not sulfur.

Some microbes use different wavelengths of visible light to make food. The first changes you see might be green or purple spots on the side of the column facing the light source. These spots are photosynthetic microbes. If there is too much light or not enough light, these microbes will not grow.

Sulfur levels are highest at the bottom of the column. Microbes that grow here can survive without oxygen and instead use sulfur.

Sulfur-reducing bacteria

Sulfur levels are highest near the bottom. Here, sulfate-reducing bacteria that cannot tolerate oxygen use the egg yolk. This process releases hydrogen sulfide, which, not surprisingly, smells like rotten eggs!

Sulfur bacteria

A little lower, purple and green sulfur bacteria use light, carbon, and hydrogen.

Non-sulfur bacteria

In the mud in the middle, purple non-sulfur bacteria get energy from sunlight and carbon. They convert carbon-rich plant materials, like newspapers, into carbon dioxide.


Oxygen levels are highest near the top. Here,  cyanobacteria  use sunlight, carbon, and hydrogen to produce energy while giving off oxygen.

Experiment with More Winogradsky Columns!

Want to see how varying nutrients and sunlight will affect the microbe layers? Create more columns with these different conditions and compare the results.

Vary the Nutrients

  • same amount of sunlight
  • same source of microbes
A newspaper, and two eggs; one egg is broken showing the yolk.


egg yolk + newspaper

A newspaper.


newspaper only

Two eggs; one egg is broken showing the yolk.


egg yolk only

Vary the Amount of Sunlight

  • same nutrients (egg yolk + newspaper)
  • same source of microbes
A winogradsky column, split down the middle vertically; The left side is bathed in sunlight, and the other is in total darkness.


place the column in a brightly lit place, so it experiences both day and night cycles

A winogradsky column under a desk lamp. The lamp is on, bathing the column in light against the dark surroundings.


place the column under a desk lamp all day and all night

A winogradsky column sitting on a countertop in total darkness.


place the column in a dark place, like a closet, so it does not experience light

Vary the Source of Microbes

  • same amount of sunlight
  • same nutrients (egg yolk + newspaper)
A plastic shovel in dark, rich soil with a stream and mountains in the background.


place the column in a brightly lit place, so it experiences both day and night cycles

A plastic shovel in beach sand, with the surf and puffy clouds in the background.


a different source of mud, sand, or soil

A plastic shovel in dark soil, with grass and forest trees in the background.


a third source of mud, sand, or soil

Image Credits:

Illustrations: © Liz Vernon/AMNH, Photos: L. Johnsonii, courtesy of Kathryn Cross/Institute of Food Research; Sergei Winogradsky, Public Domain via Wikimedia Commons; Materials and steps, © AMNH